| Department / Division | Location | Phone |
| City Clerk’s office | City Hall (room 209) | |
| City Attorney’s office | City Hall (room 202) | (415) 485-3080 |
| City Manager’s office | City Hall (room 203) | (415) 485-3070 |
| — Homelessness Division | City Hall (upstairs) | |
| — Information Technology Division | City Hall (room 207) | |
| — Parking Services Division | 1033 C Street | |
| — Sustainability Division | Boyd House | |
| — Volunteer Division | Boyd House | |
| Community Development | City Hall (upstairs) | |
| — Building Division | City Hall (upstairs) | |
| — Code Enforcement | City Hall (upstairs) | |
| — Planning Division | City Hall (upstairs) | |
| Community Services | 618 B Street | |
| — Boro Community Center | 50 Canal Street | |
| — Falkirk Cultural Center | 1408 Mission Avenue | |
| — Terra Linda Community Center | 670 Del Ganado Road | |
| — San Rafael Community Center | 618 B Street | |
| — Special Events Division | 1408 Mission Avenue | |
| Economic Development | Boyd House | |
| Finance | City Hall (room 204) | |
| — Business License Division | City Hall (upstairs) | |
| Fire | 1600 Los Gamos Dr, Suite 345 | |
| — Emergency Services Division | ||
| — Fire Prevention Division | ||